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Biological Dynamics Markup Language

Biological Dynamics Markup Language (BDML) is an XML format for quantitative data describing biological dynamics. It was developed by the Shuichi Onami team at RIKEN QBiC.

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Jul 18, 2026
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Biological Dynamics Markup Language (BDML) is an XML format for quantitative data describing biological dynamics.1 It was developed by the Shuichi Onami team at RIKEN QBiC.

The Onami lab hosts the Systems Science of Biological Dynamics (SSBD) database.

References

References

  1. Kyoda, Koji; Tohsato, Yukako; Ho, Kenneth H. L.; Onami, Shuichi (2015). "Biological Dynamics Markup Language (BDML): An open format for representing quantitative biological dynamics data". Bioinformatics. 31 (7): 1044–1052. doi:10.1093/bioinformatics/btu767. PMC 4382901. PMID 25414366.