 | |
| Content | |
|---|---|
| Description | functional genomics resource for agriculture. |
| Contact | |
| Research center | University of Arizona |
| Authors | Fiona M McCarthy |
| Primary citation | McCarthy & al. (2006)1 |
| Release date | 2006 |
| Access | |
| Website | https://agbase.arizona.edu/ |
AgBase is a curated genomic database containing functional annotations of agriculturally important animals, plants, microbes and parasites.1 AgBase biocurators provides annotation of Gene Ontology terms and Plant ontology terms for gene products.2 By 2011 AgBase provided information for 18 organisms including horse, cat, dog, cotton, rice and soybean.3
References
References
- McCarthy, Fiona M; Wang Nan; Magee G Bryce; Nanduri Bindu; Lawrence Mark L; Camon Evelyn B; Barrell Daniel G; Hill David P; Dolan Mary E; Williams W Paul; Luthe Dawn S; Bridges Susan M; Burgess Shane C (2006). "AgBase: a functional genomics resource for agriculture". BMC Genomics. 7. England: 229. doi:10.1186/1471-2164-7-229. PMC 1618847. PMID 16961921.
- Pillai, L; Chouvarine, P; Tudor, C. O.; Schmidt, C. J.; Vijay-Shanker, K; McCarthy, F. M. (2012). "Developing a biocuration workflow for Ag Base, a non-model organism database". Database. 2012 bas038. doi:10.1093/database/bas038. PMC 3500517. PMID 23160411.
- McCarthy, F. M.; Gresham, C. R.; Buza, T. J.; Chouvarine, P; Pillai, L. R.; Kumar, R; Ozkan, S; Wang, H; Manda, P; Arick, T; Bridges, S. M.; Burgess, S. C. (2011). "Ag Base: Supporting functional modeling in agricultural organisms". Nucleic Acids Research. 39 (Database issue): D497–506. doi:10.1093/nar/gkq1115. PMC 3013706. PMID 21075795.